Algebraic statistics for computational biology

Algebraic statistics for computational biology / edited by Lior Pachter and Bernd Sturmfels.

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Bibliographic Details
Other Authors: Pachter, Lior, 1973-, Sturmfels, Bernd, 1962-
Format: Book
Language:English
Published: Cambridge ; New York : Cambridge University Press, 2005.
Subjects:
Biometry.
Algebra.
Online Access:Contributor biographical information
Table of Contents:
  • Statistics / L. Pachter and B. Sturmfels
  • Computation / L. Pachter and B. Sturmfels
  • Algebra / L. Pachter and B. Sturmfels
  • Biology / L. Pachter and B. Sturmfels
  • Parametric inference / R. Mihaescu
  • Polytope propagation on graphs / M. Joswig
  • Parametric sequence alignment / C. Dewey and K. Woods
  • Bounds for optimal sequence alignment / S. Elizalde and F. Lam
  • Inference functions / S. Elizalde
  • Geometry of Markov chains / E. Kuo
  • Equations defining hidden Markov models / N. Bray and J. Morton
  • The EM algorithm for hidden Markov models / I.B. Hallgrímsdóttir, R.A. Milowski and J. Yu
  • Homology mapping with Markov random fields / A. Caspi
  • Mutagenetic tree models / N. Beerenwinkel and M. Drton
  • Catalog of small trees / M. Casanellas, L.D. Garcia and S. Sullivant
  • The strand symmetric model / M. Casanellas and S. Sullivant
  • Extending tree models to splits netweorks / D. Bryant
  • Small trees and generalized neighbor-joining / M. Contois and D. Levy
  • Tree construction using Singular Value Decomposition / N. Eriksson
  • Applications of interval methods to phylogenetics / R. Sainudiin and R. Yoshida
  • Analysis of point mutations in vertebrate genomes / J. Al-Aidroos and S. Snir
  • Ultra-conserved elements in vertebrate and fly genomes / M. Drton, N. Eriksson and G. Leung.

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